PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Gorai.005G230800.1
Common NameB456_005G230800, LOC105795168
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium
Family MYB_related
Protein Properties Length: 301aa    MW: 33279.2 Da    PI: 10.339
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Gorai.005G230800.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding37.55.6e-12555146
                        TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHT.....TTS-HHHHHHHHHH CS
     Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmg.....kgRtlkqcksrwqk 46
                        +++WT+eE+  l+ +v ++G g W+tI +          R+  ++k++w++
  Gorai.005G230800.1  5 KQKWTPEEEAALKAGVIKHGAGKWRTILKDPEfsgvlYLRSNVDLKDKWRN 55
                        79***********************************88***********9 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129412.213158IPR017930Myb domain
SuperFamilySSF466893.67E-15265IPR009057Homeodomain-like
Gene3DG3DSA:1.10.10.601.5E-13456IPR009057Homeodomain-like
SMARTSM007173.8E-7459IPR001005SANT/Myb domain
PfamPF002491.5E-8555IPR001005SANT/Myb domain
CDDcd116607.37E-18656No hitNo description
SuperFamilySSF467851.96E-16118197IPR011991Winged helix-turn-helix DNA-binding domain
SMARTSM005262.8E-13118183IPR005818Linker histone H1/H5, domain H15
Gene3DG3DSA:1.10.10.102.9E-14119188IPR011991Winged helix-turn-helix DNA-binding domain
PROSITE profilePS5150423.749120188IPR005818Linker histone H1/H5, domain H15
PfamPF005382.5E-7125181IPR005818Linker histone H1/H5, domain H15
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006334Biological Processnucleosome assembly
GO:0006357Biological Processregulation of transcription from RNA polymerase II promoter
GO:0009651Biological Processresponse to salt stress
GO:0009723Biological Processresponse to ethylene
GO:0009733Biological Processresponse to auxin
GO:0009737Biological Processresponse to abscisic acid
GO:0009739Biological Processresponse to gibberellin
GO:0009751Biological Processresponse to salicylic acid
GO:0009753Biological Processresponse to jasmonic acid
GO:0046686Biological Processresponse to cadmium ion
GO:0000786Cellular Componentnucleosome
GO:0005730Cellular Componentnucleolus
GO:0003691Molecular Functiondouble-stranded telomeric DNA binding
GO:0033613Molecular Functionactivating transcription factor binding
GO:0042803Molecular Functionprotein homodimerization activity
GO:0070491Molecular Functionrepressing transcription factor binding
GO:1990841Molecular Functionpromoter-specific chromatin binding
Sequence ? help Back to Top
Protein Sequence    Length: 301 aa     Download sequence    Send to blast
MGAPKQKWTP EEEAALKAGV IKHGAGKWRT ILKDPEFSGV LYLRSNVDLK DKWRNMSVMA  60
NGWGSRDKAR LAVKRTSSFP KQEESAVDLA VAPSDEEIVD VKSVPVSSAT LQIPSSTKRS  120
IVRLDNLIME AITTLKEPGG SNKTNIAAYI EEQYWAPPDF KRLLSAKLKY LTACGRLIKV  180
KRRYRIAPAL SFSDRRRNHP MLFSEGRQRV SPRFDRDDLK IITKSQIDLE LARMRKMTPQ  240
EAAAAAARAV AEAEAAIAEA EEAAREAEVA EADAEAAQAF AEAAMKTLKG RNNQKVMVRA  300
*
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00607ChIP-seqTransfer from AT1G49950Download
Motif logo
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_012480126.10.0PREDICTED: telomere repeat-binding factor 1
RefseqXP_012480127.10.0PREDICTED: telomere repeat-binding factor 1
SwissprotQ8VWK41e-111TRB1_ARATH; Telomere repeat-binding factor 1
TrEMBLA0A0D2SM510.0A0A0D2SM51_G
STRINGVIT_03s0091g01030.t011e-120(Vitis vinifera)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM87222539
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G49950.31e-107telomere repeat binding factor 1
Publications ? help Back to Top
  1. Paterson AH, et al.
    Repeated polyploidization of Gossypium genomes and the evolution of spinnable cotton fibres.
    Nature, 2012. 492(7429): p. 423-7
    [PMID:23257886]